feat: multi-panel colouring tutorial + repo hygiene bumps - #14
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The repo was renamed from -notebooks to -tutorials; update the package name, Source URL, Jupyter kernel name, and clone/setup instructions to the canonical name (previously worked only via GitHub's redirect).
spatialdata-plot dropped Python 3.11 in 0.4.1 (scverse/spatialdata-plot#743); match it here. Bumps requires-python, the pixi python pin, and ruff's target-version. CI already runs 3.13.
The multi-panel color=[...] tutorial needs the scanpy-style multi-panel feature (scverse/spatialdata-plot#686), first released in 0.4.1. Update both the exec extra and the pixi pypi dependency.
New tutorials/multi_panel_color.ipynb demonstrating scanpy-style color=[...] for render_labels/render_shapes: one-to-many colourings, mixing categorical and continuous, ncols grid control, and shared palette/cmap across panels. Uses the synthetic blobs dataset, mirrors the color_and_palette structure, and executes against spatialdata-plot 0.4.1. Adds a gallery card + toctree entry and a 549x491 thumbnail matching the existing cards.
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Check out this pull request on See visual diffs & provide feedback on Jupyter Notebooks. Powered by ReviewNB |
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📖 Docs preview: https://scverse.org/spatialdata-plot-tutorials/pr-14/gallery.html Built from 7eadbf3; redeployed on every push. |
Regenerate the gallery thumbnail with larger titles, legend, and colorbar labels; drop the pixel-tick frame and crop outer margins so the panels fill the card. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
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What
Adds the first of the 0.4.1 feature tutorials — multi-panel colouring — and folds in three small repo-hygiene bumps that block/accompany it.
New tutorial
tutorials/multi_panel_color.ipynb— scanpy-stylecolor=[...]forrender_labels/render_shapes(feature landed in spatialdata-plot 0.4.1, scverse/spatialdata-plot#686):render_shapesshow(ncols=...)grid controlpalette/cmap/normacross panelsBuilt on the synthetic
blobsdataset, mirrors thecolor_and_palettestructure, executed end-to-end against 0.4.1. Wired intotutorials/index.md(gallery card + toctree) with a 549×491 thumbnail matching the existing cards' aspect ratio.Hygiene (separate commits)
spatialdata-plot-notebooks→spatialdata-plot-tutorials(package name, Source URL, kernel name, clone instructions). The repo was renamed; these worked only via GitHub's redirect.>=3.12(the library dropped 3.11 in 0.4.1, Require Python >=3.12, drop 3.11 spatialdata-plot#743).spatialdata-plotpin to>=0.4.1(exec extra + pixi) so the multi-panel feature is guaranteed present.Notes / follow-ups
docs/gallery.mdstill linksgithub.com/scverse/spatialdata-plot-notebooks— needs a one-line follow-up inscverse/spatialdata-plot.PercentileNormalize,as_pointsfast rendering, shape styling (fill/outline/alpha).